PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.285230.1
Common NameCsa_5G604940, LOC101221116
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 96aa    MW: 10505.8 Da    PI: 9.3963
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.285230.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-0922631555
                    HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                    +i + +++L++l+P+ + + +s ++s + +L+++++YI+sLq
  Cucsa.285230.1 22 QIADLISKLQQLIPEiRNGRSSSRVSASKVLQETCNYIRSLQ 63
                    799************998999999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.245762IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00421768IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-92182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-62263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-92276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MSGRSSRSRR SGVGSRNISD EQIADLISKL QQLIPEIRNG RSSSRVSASK VLQETCNYIR  60
SLQREVDDLS DRLSELLAST DPESAQAAII RSLLM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818963e-68LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132643e-68LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135185.11e-59PREDICTED: transcription factor PRE6-like
SwissprotQ8GW324e-35PRE6_ARATH; Transcription factor PRE6
TrEMBLA0A0A0KQJ71e-59A0A0A0KQJ7_CUCSA; Transcription regulator
STRINGPGSC0003DMT4000074307e-37(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.14e-36bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]